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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST039440
species: Pinus taeda
miRNA family: MIR950
source: miRBase, original name: pta-MIR950b (MI0005800)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGGTCCTCGGTGGTTTAT

miRNA*
AAACCATCGTGGAGCAGATG

mismatches: 3
bulges: 0

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pre-miRNA
GGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTACGATAAACCATCGTGGAGCAGATGAAAAGAGCACCTCC

dot-bracket secondary structure
(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))


SIMILARITIES
miRBase pta-MIR950a: 4e-40

PMRD pta-miR950b: 3e-47

microPC miR950: 5e-21
UniProt no hits

RFAM no hits

Identical with: pta-miR950b from PMRD (MNEST051579)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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